Note that odd values of topography (e.g., -2001m) are constrained by actual soundings while even values (e.g., -2000m) are predicted from gravity. Therefore one can extract the locations of the ship sounding.
Gravity Reference: Sandwell, D. T., and W. H. F. Smith, Global marine gravity from retracked Geosat and ERS-1 altimetry: Ridge Segmentation versus spreading rate, J. Geophys. Res., 114, B01411, doi:10.1029/2008JB006008, 2009.
Related Links
The Global Topography
information page
-10.1
359.5 360
-13
(Any values between -360 and 360 are acceptable)
Also, these files can get quite large, so you may have to divide the area up into smaller chunks.
The Marine Gravity information page
The GEODESY homepage
The IGPP homepage
The SIO homepage